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3D Quantification Pipeline

Our Pipeline / Ecosystem

WT and Tg mice are treated experimentally. Perfused and fixed brains are cleared, stained and imaged in the Mesoscale Imaging System.

AI-powered workflows in our 3TK software identify individual cells/objects throughout the brain and extract intensity, size and shape metrics.

Morphing experimental brains onto the Allen Reference Brain allows for statistical anatomic evaluation of object level features across 100’s of brain regions.

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