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Automated Brain-Wide Identification of Microglia

The top images are a single z-plane through an intact 3D experimentally-treated brain. Iba1 immunoreactivity is shown on the left and the corresponding cell labels from a AI-powered workflow in our 3TK software are on the right.

Zoomed images show cellular morphology masks. Small seeming labels can be portions of microglia that project orthogonal to the 2D slice shown. Cell masks allow for counts, shape analysis and fluorescence intensity measurements.

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